209a210,219
> 	sort( $plugin_files );
> 	$plugin_basedir = plugin_basename("$dir/");
> 	$plugin_root_files = array();
> 	foreach ( $plugin_files as $key => $value ) {
> 		if ( ! preg_match( '_' . $plugin_basedir . '.+/_', $value ) ) {
> 			$plugin_root_files[] = $value;
> 			unset( $plugin_files[ $key ] );
> 		}
> 	}
> 	$plugin_files = $plugin_root_files + $plugin_files;
