Index: wp-admin/includes/plugin.php
===================================================================
--- wp-admin/includes/plugin.php	(revision 27092)
+++ wp-admin/includes/plugin.php	(working copy)
@@ -670,17 +670,6 @@
 			 */
 			do_action( 'deactivate_' . $plugin, $network_deactivating );
 
-			/**
-			 * Fires for each plugin being deactivated in deactivate_plugins(), after deactivation
-			 * and when the $silent parameter is false.
-			 *
-			 * @since 2.9.0
-			 *
-			 * @param string $plugin               Plugin path to main plugin file with plugin data.
-			 * @param bool   $network_deactivating Whether the plugin is deactivated for all sites in the network
-			 *                                     or just the current site. Multisite only. Default is false.
-			 */
-			do_action( 'deactivated_plugin', $plugin, $network_deactivating );
 		}
 	}
 
@@ -688,6 +677,20 @@
 		update_option('active_plugins', $current);
 	if ( $do_network )
 		update_site_option( 'active_sitewide_plugins', $network_current );
+	
+	if ( ! $silent ) {
+		/**
+		 * Fires for each plugin being deactivated in deactivate_plugins(), after deactivation
+		 * and when the $silent parameter is false.
+		 *
+		 * @since 2.9.0
+		 *
+		 * @param string $plugin               Plugin path to main plugin file with plugin data.
+		 * @param bool   $network_deactivating Whether the plugin is deactivated for all sites in the network
+		 *                                     or just the current site. Multisite only. Default is false.
+		 */
+		do_action( 'deactivated_plugin', $plugin, $network_deactivating );
+	}
 }
 
 /**