WP_Upgrader::run docblock incorrect

[paulkevan]

The docblock description for the run function inaccurately has the default value for clear_working as false, whereas the default is true.

The ordering of the array values should also be updated to be consistent with the docblock, similar to the install_package function.

Fixes the difference between docblock and the code, and also reorders for consistency.

Trac ticket: https://core.trac.wordpress.org/ticket/55450

[davidbaumwald]

In 52986:

Upgrade/Install: Fix the docs for the default value of $clear_working in WP_Upgrader::run.

The current docblock for WP_Upgrader::run indicates the default value for the clear_working key of the $options argument is false. However, in the code directly below, the default is shown to be `true. This change updates the docblock to correct the default.

This commit also reorders the $defaults to match the order they appear in the docblock.

Props paulkevan.
Fixes #55450.

Thanks for the PR! This was merged in https://core.trac.wordpress.org/changeset/52986.

[costdev]

Introduced in [11005].

[SergeyBiryukov]

And the docs were added in [30758].